On a touchscreen device, pinch two fingers. On a touchscreen device, use a two-finger drag. Alternatively, use the Control button + the left mouse button and move. To translate the structure, click the right mouse button and move. Alternatively, use the Shift button + left mouse button and drag. To rotate the structure, click the left mouse button and move. ○ How can I save multiple views of a structure in a Mol* session or state for sharing? How do I navigate the 3D canvas using a mouse, touchpad, or touchscreen? Diversity, Equity, Inclusion, and Access.Citation, Usage, Privacy Policies, Logo.Biologically Interesting Molecule Reference Dictionary (BIRD).copying JmolApplet.jar to /Users/jonathan/Documents/Presentations/BCCE 2008/How-To/General Jmol View Manipulation/JmolApplet. copying /Users/jonathan/Documents/Presentations/BCCE 2008/How-To/ to /Users/jonathan/Documents/Presentations/BCCE 2008/How-To/General Jmol View Manipulation/ adding Ethane_for_Atom_Size_and_Bond_Size.spt adding Ethane_for_Atom_Size_and_Bond_Size.png copying JmolApplet.jar to /Users/jonathan/Documents/Presentations/BCCE 2008/How-To/General Jmol View Manipulation/JmolApplet.jar copying Jmol.js to /Users/jonathan/Documents/Presentations/BCCE 2008/How-To/General Jmol View Manipulation/Jmol.js copying /Users/jonathan/Documents/Presentations/BCCE 2008/How-To/ethane-staggered-3-21G.log to /Users/jonathan/Documents/Presentations/BCCE 2008/How-To/General Jmol View Manipulation/ethane-staggered-3-21G.log Using directory /Users/jonathan/Documents/Presentations/BCCE 2008/How-To/General Jmol View Manipulation Then (Right mouse button > Color > Atom > Red). Make the polar residues red (Right mouse button.Make the whole protein cyan (Right mouse button.Render as spacefilling (Right mouse button >.select the protein (Right mouse button >.Render the protein as space filling with the polar.Make the cartoon violet (Right mouse button >.Render as cartoon (Right mouse button > Style.select DNA (Right mouse button > Select.Some things to try with the model in Figure 5: (Right mouse button > Style > Scheme or Structure > Use the pop-up menu (Right mouse button, control-click on oneīutton mice, > Select > choose among the options.) The part of the structure you want to work with. The plane defined by atoms 1, 2 & 3 and the plane defined by atoms Generally the angle between two planes defined by four selected atoms)Ĭursor will convert to a "+". (the angle between two bonds on atoms separated by one bond, or more The angle made by these three atoms will be displayed. Move to the third atom and double click on it. The command is: " measure allconnected (*)(*)" You can also displayīond lengths at once using the command line. Of nm, angstroms and pm (Right mouse button, control-click on one button Using the pop-up menu you can choose between units The distance between the atoms willīe shown. The Bond submenu. You can try this in an open Jmolĭouble click on the first atom. Wireframe is also available in the pull-down display menu in The options are: CPK spacefill Ball and Stick Sticks Wireframe. (Right mouse button > Style > Scheme > XXX). Some common combinations of atom size and bond from the pop-up menu Pop-up menu (Right mouse button, controlĬlick on one button mice, > Style > Atoms > XXXĪpplication or by clicking the link in figure 3 to convert it to a liveĪpplication and the applet. Use the pull-down menus of the application or the pop-up menu in theĪpplication and the applet. The axes are screen axes: Y is up-down, X is The default Y rate is 30 and 0 for X and Z rates. Mouse button > Spin > Set X (Y or Z) Rate > XX). > Spin > Off). You can try this in an open JmolĪpplication or by clicking the link in figure 2 to convert it to a liveĪbout axes other than Y select the rate (degrees per step)įor rotation about the X or Z axis. The spinning of the molecule use the pop-up menuĪgain (Right mouse button, control-click on one button mice, Using the default spin settings use the pop-up menu in both theĪpplication and the applet (Right mouse button, control-click on oneīutton mice, > Spin > On). You can try this inĪn open Jmol application or by clicking the link in figure 2 to convert View of staggered ethane ( ethane-staggered-3-21G.log)
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